servers / claidex-mcp
Claidex MCP
communitystreamable_httpremotewrite capablehealthy
Biomedical failure intelligence platform for terminated trials and translational analysis.
01Tools · 24
How to read this: tool names here are observed from a live tools/list handshake. The Risk label is a heuristic inferred from the tool name (write/destructive verbs), not from executing the tool — a conservative guess, not a verified capability. We never escalate risk from a description. Found one that's wrong? Tell us — we fix on report.
| Tool | Risk | Side effects | Approval |
|---|---|---|---|
| search_preprint_flags Search the Claidex Preprint Watch database for bioRxiv preprints flagged as contradicting the clinical failure record. Search by target gene, disease, or preprint title. | read | false | unknown |
| query_opentargets Query Open Targets for target-disease association evidence. Returns genetic evidence score, clinical evidence, known drugs, tractability, and safety liabilities for a gene-disease pair. | read | false | unknown |
| search_claims Search the Claidex failure database for post-mortems matching a drug name, gene target, disease, failure archetype, or sponsor. Returns matching claims with title, slug, drug, target, disease, phase, failure archetype, Open Targets score, and MRS score. | read | false | unknown |
| claidex_research_prompt Compose a rigorous, reusable investigation prompt that tells an MCP client which Claidex tools and resources to use. | unknown | unknown | unknown |
| claidex_claim_risk_matrix Search claims and summarize MRS bands, trial phases, failure archetypes, and high-risk programs for rapid diligence. | read | false | unknown |
| claidex_capabilities Return the Claidex MCP feature map, configured storage/model providers, safety controls, resources, prompts, and tool counts. | unknown | unknown | unknown |
| claidex_tool_catalog Return the complete MCP tool catalog, optionally including full input schemas and filtering native versus agent-backed tools. | unknown | unknown | unknown |
| fetch Fetch a specific result returned by search. This compatibility tool supports OpenAI and ChatGPT remote MCP retrieval flows. | read | false | unknown |
| fetch_research_url Fetch a public HTTPS research URL, JSON API response, package metadata endpoint, documentation page, or dataset preview. Blocks private/internal hosts and truncates large responses. | read | false | unknown |
| get_claim_content Retrieve the complete text content of a specific Claidex Claim by its slug. Use this when you need to read the full post-mortem analysis, including hypothesis, failure mechanism, and prevention analysis. | read | false | unknown |
| query_chembl Look up a drug or compound in ChEMBL. Returns mechanism of action, primary target, ChEMBL ID, max development phase, molecular type, and synonyms. | read | false | unknown |
| query_package_registry Look up package metadata from npm or PyPI before recommending code, analysis packages, API clients, or dataset tooling. | read | false | unknown |
| rerank_documents Rerank candidate documents/passages against a query using a dedicated reranking model. Use after retrieval/search when exact relevance ordering matters. | read | false | unknown |
| web_search Search the web for recent news, investor commentary, analyst notes, press releases, and conference coverage about drugs, clinical trials, or biomedical mechanisms. | read | false | unknown |
| query_openfda Query the FDA FAERS database for adverse event signals for a drug. Returns top adverse event terms, serious case count, and death count. | read | false | unknown |
| claidex_health_snapshot Return Sentinel metrics, coverage, graph counts, recent automation runs, MRS bands, and preprint-watch summaries. | read | false | unknown |
| rank_documents_by_embedding Embed a query and candidate documents, then rank documents by cosine similarity. Use for semantic matching, retrieval checks, clustering triage, and lightweight RAG over user-provided passages. | read | false | unknown |
| query_failure_graph Query the Claidex failure graph for a specific gene target. Returns the Mechanism Risk Score (MRS), failure counts by phase and archetype, and all related claim slugs. | read | false | unknown |
| search_pubmed Search PubMed for biomedical literature. Returns title, authors, journal, year, DOI, abstract, and PMID for each result. | read | false | unknown |
| search Search Claidex failure claims and preprint flags. This compatibility tool returns citation-ready results for OpenAI and ChatGPT remote MCP flows. | read | false | unknown |
| query_clinicaltrials Search ClinicalTrials.gov for clinical trials. Can search by drug name, condition, target, or NCT ID. Returns trial status, phase, sponsor, primary endpoints, and why_stopped if terminated. | read | false | unknown |
| consult_specialist_model Ask a specialist Gateway model for code, database/tool-calling, statistics, literature, preprint, or mechanistic synthesis support. Use for hard subproblems, second opinions, code generation/review, or complex synthesis. | unknown | unknown | unknown |
| run_computation Evaluate deterministic mathematical expressions with optional variables. Use for algebra, matrices, vectors, transformations, descriptive numerical checks, and reproducible calculations. Does not execute arbitrary JavaScript or install packages. | write | true | unknown |
| run_statistical_analysis Run a statistical analysis computation. Supports: Wilson confidence intervals, binomial proportions, phase transition success rates, power calculations, Bayesian posterior estimates, descriptive statistics, and two-proportion comparisons. Returns computed values, interpretation, and LaTeX formula. | write | true | unknown |
02Install & source
https://app.claidex.com/api/mcp
remote_url05Provenance & freshness
sourcesOfficial MCP Registry [p1]
last_checked2026-08-20 09:54Z
next_check2026-08-22 09:50Z
cadenceevery 48h
verifiedtools_list:passed handshake:passed metadata:passed tools_list:passed handshake:passed metadata:passed tools_list:passed handshake:passed metadata:passed tools_list:passed
index_statusindex — 5 unique facts >= 5
06Badge
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